73 lines
1.7 KiB
Makefile
73 lines
1.7 KiB
Makefile
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#
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# Copyright 2018, Chanhee Park <parkchanhee@gmail.com> and Daehwan Kim <infphilo@gmail.com>
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#
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# This file is part of HISAT 2.
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#
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# HISAT 2 is free software: you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation, either version 3 of the License, or
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# (at your option) any later version.
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#
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# HISAT 2 is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with HISAT 2. If not, see <http://www.gnu.org/licenses/>.
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#
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JAVA_HOME := $(JAVA_HOME)
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HISAT2_DIR = ../..
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CC = gcc
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MACOS = 0
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ifneq (,$(findstring Darwin,$(shell uname)))
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MACOS = 1
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endif
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INCLUDES = -I $(JAVA_HOME)/include
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INCLUDES += -I $(JAVA_HOME)/include/linux
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TARGET_LIB = libht2jni.so
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SHARED_FLAG = -shared
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ifeq (1,$(MACOS))
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INCLUDES += -I $(JAVA_HOME)/include/darwin
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TARGET_LIB = libht2jni.jnilib
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SHARED_FLAG = -dynamiclib
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endif
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INCLUDES += -I $(HISAT2_DIR)/hisat2lib
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CFLAGS = -fPIC $(INCLUDES)
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#CFLAGS += -DDEBUG
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SRCS = ht2module.c
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OBJS = $(SRCS:.c=.o)
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all: lib
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lib: $(TARGET_LIB)
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$(TARGET_LIB): HT2Module.h $(OBJS)
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$(CC) $(SHARED_FLAG) -o $@ $(OBJS) $(HISAT2_DIR)/libhisat2lib.a -lstdc++
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HT2Module.h HT2Module.class: HT2Module.java
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javac -h . HT2Module.java
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example: HT2ModuleExample.class
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HT2ModuleExample.class: HT2ModuleExample.java
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javac HT2ModuleExample.java
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clean:
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rm -f *.class HT2Module.h HT2Module_HT2Position.h *.so *.o $(TARGET_LIB)
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test: all example
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java -Djava.library.path=. HT2ModuleExample
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