68 lines
1.5 KiB
C
68 lines
1.5 KiB
C
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/*
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* Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
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*
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* This file is part of Bowtie 2.
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*
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* Bowtie 2 is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* Bowtie 2 is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>.
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*/
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/**
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* presets.h
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*
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* Maps simple command-line options to more complicated combinations of
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* options for ease-of-use.
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*/
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#ifndef PRESETS_H_
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#define PRESETS_H_
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#include <string>
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#include <utility>
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#include "ds.h"
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class Presets {
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public:
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Presets() { }
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virtual ~Presets() { }
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virtual void apply(
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const std::string& preset,
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std::string& policy,
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EList<std::pair<int, std::string> >& opts) = 0;
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virtual const char * name() = 0;
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};
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/**
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* Initial collection of presets: 8/14/2011 prior to first Bowtie 2 release.
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*/
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class PresetsV0 : public Presets {
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public:
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PresetsV0() : Presets() { }
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virtual ~PresetsV0() { }
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virtual void apply(
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const std::string& preset,
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std::string& policy,
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EList<std::pair<int, std::string> >& opts);
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virtual const char * name() { return "V0"; }
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};
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#endif /*ndef PRESETS_H_*/
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