32 lines
1.0 KiB
Bash
32 lines
1.0 KiB
Bash
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#!/bin/sh
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#
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# Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
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#
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# This file is part of Bowtie 2.
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#
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# Bowtie 2 is free software: you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation, either version 3 of the License, or
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# (at your option) any later version.
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#
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# Bowtie 2 is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>.
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#
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CPUS=$1
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shift
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make -j $CPUS bowtie2-align bowtie2-align-debug bowtie2-build bowtie2-build-debug && \
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perl scripts/sim/run.pl \
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--bowtie2=./bowtie2-align \
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--bowtie2-debug=./bowtie2-align-debug \
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--bowtie2-build=./bowtie2-build \
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--bowtie2-build-debug=./bowtie2-build-debug \
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--cpus=$CPUS \
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$*
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