12 lines
509 B
Bash
12 lines
509 B
Bash
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#!/bin/bash -l
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#SBATCH --job-name=infphio.HLA.ILMN.extract.genome
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#SBATCH --nodes=1
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#SBATCH --cpus-per-task=8
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#SBATCH --mem=80G
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#SBATCH --partition=shared
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#SBATCH --time=166:0:0
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#SBATCH --workdir=/home-1/dkim136@jhu.edu/infphilo/hisat2/evaluation/tests/HLA_novel
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/home-1/dkim136@jhu.edu/infphilo/hisat2/evaluation/tests/HLA_novel/scripts/extract_reads.py --base-fname genotype_genome --reference-type genome --read-dir /home-1/dkim136@jhu.edu/ssalzbe1/users/infphilo/ILMN_HiSeqX --out-dir ILMN_HiSeqX -p 8
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