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fix chromosome compare

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Yaossg 2025-01-19 18:11:37 +08:00
parent a3817bf0b7
commit e22428e816
1 changed files with 2 additions and 1 deletions
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hisat_3n_table.cpp
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@ -287,7 +287,8 @@ int hisat_3n_table()
} }
// if the samChromosome is different than current positions' chromosome, finish all SAM line. // if the samChromosome is different than current positions' chromosome, finish all SAM line.
// then load a new reference chromosome. // then load a new reference chromosome.
if (samChromosome != *positions->chromosome) { auto old = positions->chromosome;
if (samChromosome != (old ? *old : "")) {
positions->appendingFinished(); positions->appendingFinished();
positions->moveAllToOutput(); positions->moveAllToOutput();
positions->loadNewChromosome(std::move(samChromosome)); positions->loadNewChromosome(std::move(samChromosome));