/* * Copyright 2011, Ben Langmead * * This file is part of Bowtie 2. * * Bowtie 2 is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * Bowtie 2 is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Bowtie 2. If not, see . */ #ifndef FORMATS_H_ #define FORMATS_H_ #include /** * File-format constants and names */ enum file_format { FASTA = 1, FASTA_CONT, FASTQ, TAB_MATE5, TAB_MATE6, RAW, CMDLINE, QSEQ, SRA_FASTA, SRA_FASTQ }; static const std::string file_format_names[] = { "Invalid!", "FASTA", "FASTA sampling", "FASTQ", "Tabbed mated", "Raw", "Command line", "Chain file", "Random", "Qseq", "SRA_FASTA", "SRA_FASTQ" }; #endif /*FORMATS_H_*/