49 lines
1.3 KiB
C++
49 lines
1.3 KiB
C++
/*
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* Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
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*
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* This file is part of Bowtie 2.
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*
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* Bowtie 2 is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* Bowtie 2 is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>.
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*/
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#ifndef BOWTIE_INDEX_TYPES_H
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#define BOWTIE_INDEX_TYPES_H
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#ifdef BOWTIE_64BIT_INDEX
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#define OFF_MASK 0xffffffffffffffff
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#define OFF_LEN_MASK 0xc000000000000000
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#define LS_SIZE 0x100000000000000
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#define OFF_SIZE 8
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#define INDEX_MAX 0xffffffffffffffff
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typedef uint64_t TIndexOffU;
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typedef int64_t TIndexOff;
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#else
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#define OFF_MASK 0xffffffff
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#define OFF_LEN_MASK 0xc0000000
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#define LS_SIZE 0x10000000
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#define OFF_SIZE 4
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#define INDEX_MAX 0xffffffff
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typedef uint32_t TIndexOffU;
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typedef int TIndexOff;
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#endif /* BOWTIE_64BIT_INDEX */
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extern const std::string gfm_ext;
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#endif /* BOWTIE_INDEX_TYPES_H */
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