30 lines
1.3 KiB
Plaintext
30 lines
1.3 KiB
Plaintext
Ben Langmead <langmea@cs.jhu.edu> wrote Bowtie 2, which is based partially on
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Bowtie. Bowtie was written by Ben Langmead and Cole Trapnell.
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Bowtie & Bowtie 2: http://bowtie-bio.sf.net
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A DLL from the pthreads for Win32 library is distributed with the Win32 version
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of Bowtie 2. The pthreads for Win32 library and the GnuWin32 package have many
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contributors (see their respective web sites).
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pthreads for Win32: http://sourceware.org/pthreads-win32
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GnuWin32: http://gnuwin32.sf.net
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The ForkManager.pm perl module is used in Bowtie 2's random testing framework,
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and is included as scripts/sim/contrib/ForkManager.pm. ForkManager.pm is
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written by dLux (Szabo, Balazs), with contributions by others. See the perldoc
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in ForkManager.pm for the complete list.
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The file ls.h includes an implementation of the Larsson-Sadakane suffix sorting
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algorithm. The implementation is by N. Jesper Larsson and was adapted somewhat
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for use in Bowtie 2.
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TinyThreads is a portable thread implementation with a fairly compatible subset
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of C++11 thread management classes written by Marcus Geelnard. For more info
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check http://tinythreadpp.bitsnbites.eu/
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Various users have kindly supplied patches, bug reports and feature requests
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over the years. Many, many thanks go to them.
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September 2011
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