82 lines
2.9 KiB
YAML
82 lines
2.9 KiB
YAML
- organism: H. sapiens
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data:
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GRCh38:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch38_genome.tar.gz
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genome_snp:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch38_snp.tar.gz
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genome_tran:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch38_tran.tar.gz
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genome_snp_tran:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch38_snptran.tar.gz
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genome_rep(above 2.2.0):
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url: https://genome-idx.s3.amazonaws.com/hisat/grch38_rep.tar.gz
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genome_snp_rep(above 2.2.0):
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url: https://genome-idx.s3.amazonaws.com/hisat/grch38_snprep.tar.gz
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UCSC hg38:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/hg38_genome.tar.gz
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genome_tran:
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url: https://genome-idx.s3.amazonaws.com/hisat/hg38_tran.tar.gz
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GRCh37:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch37_genome.tar.gz
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genome_snp:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch37_snp.tar.gz
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genome_tran:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch37_tran.tar.gz
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genome_snp_tran:
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url: https://genome-idx.s3.amazonaws.com/hisat/grch37_snptran.tar.gz
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UCSC hg19:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/hg19_genome.tar.gz
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- organism: M. musculus
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data:
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GRCm38:
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genome:
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url: https://cloud.biohpc.swmed.edu/index.php/s/grcm38/download
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genome_snp:
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url: https://cloud.biohpc.swmed.edu/index.php/s/grcm38_snp/download
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genome_tran:
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url: https://cloud.biohpc.swmed.edu/index.php/s/grcm38_tran/download
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genome_snp_tran:
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url: https://cloud.biohpc.swmed.edu/index.php/s/grcm38_snp_tran/download
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UCSC mm10:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/mm10_genome.tar.gz
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- organism: R. norvegicus
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data:
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UCSC rn6:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/rn6_genome.tar.gz
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- organism: D. melanogaster
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data:
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BDGP6:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/bdgp6.tar.gz
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genome_tran:
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url: https://genome-idx.s3.amazonaws.com/hisat/bdgp6_tran.tar.gz
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UCSC dm6:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/dm6.tar.gz
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- organism: C. elegans
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data:
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WBcel235:
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genome:
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url: https://genome-idx.s3.amazonaws.com/hisat/wbcel235.tar.gz
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genome_tran:
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url: https://genome-idx.s3.amazonaws.com/hisat/wbcel235_tran.tar.gz
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UCSC ce10:
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genome:
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url: https://cloud.biohpc.swmed.edu/index.php/s/bbynxoY2TPpRNQb/download
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- organism: S. cerevisiae
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data:
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R64-1-1:
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genome:
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url: https://cloud.biohpc.swmed.edu/index.php/s/JRSoKHD5cHfpCFE/download
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genome_tran:
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url: https://cloud.biohpc.swmed.edu/index.php/s/akeiMrGGtt5KoJY/download
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UCSC sacCer3:
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genome:
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url: https://cloud.biohpc.swmed.edu/index.php/s/Gsq4goLW4TDAz4E/download
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