58 lines
1.2 KiB
C++
58 lines
1.2 KiB
C++
/*
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* Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
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*
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* This file is part of Bowtie 2.
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*
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* Bowtie 2 is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* Bowtie 2 is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>.
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*/
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#ifndef FORMATS_H_
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#define FORMATS_H_
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#include <iostream>
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/**
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* File-format constants and names
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*/
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enum file_format {
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FASTA = 1,
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FASTA_CONT,
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FASTQ,
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TAB_MATE5,
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TAB_MATE6,
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RAW,
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CMDLINE,
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QSEQ,
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SRA_FASTA,
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SRA_FASTQ
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};
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static const std::string file_format_names[] = {
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"Invalid!",
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"FASTA",
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"FASTA sampling",
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"FASTQ",
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"Tabbed mated",
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"Raw",
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"Command line",
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"Chain file",
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"Random",
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"Qseq",
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"SRA_FASTA",
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"SRA_FASTQ"
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};
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#endif /*FORMATS_H_*/
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