hisat-3n/docs/_pages/download.md

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Please cite:

Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915 (2019). https://doi.org/10.1038/s41587-019-0201-4

• TOC {:toc}

Index

HISAT2 indexes are hosted on AWS (Amazon Web Services), thanks to the AWS Public Datasets program. Click this link for more details.

{% for item in site.data.download-index %}

{{ item.organism }}

{% for data in item.data %}

{{ data[0] }}

{% for genome in data[1] %} {% endfor %}

{{ genome[0] }}

{% for url in genome[1] %} {{ url[1] }} {% endfor %}

{% endfor %} {% endfor %}

genome: HISAT2 index for reference
genome_snp: HISAT2 Graph index for reference plus SNPs
genome_tran: HISAT2 Graph index for reference plus transcripts
genome_snp_tran: HISAT2 Graph index for reference plus SNPs and transcripts

Binaries

{: binaries }

{% assign targets = site.data.download-binary.latest_version | split: "," %} {% for release in site.data.download-binary.release %} {% assign version = release['version'] %} {% if targets contains version or targets == null %} {% assign name = release['name'] %}

Version: {{name}} {{version}}

{% for artifact in release['artifacts'] %} {% assign type = artifact[0] %} {% endfor %}

Release Date: {{release['date']}}
{{type}}	{{artifact[1]}}

{% endif %} {% endfor %}